Publications

Verified against Google Scholar, September 2026.

The complete publication record is also available on Google Scholar.

Publications since 2019

Research from our current programme and continuing collaborations. Use the subject categories to explore the principal research themes.

 

Analysis of intracellular fatty acid metabolism during doxorubicin-induced senescence of MCF7 cells using Raman imaging

Raman imaging
Cellular senescence
Muscle and aging
Pundlik SS, Venkateshvaran A, Suresh Y, Mamgain H, Ramanathan A. ACS Omega 2026;11(9):14426.
 

Comprehensive metabolomic analysis of saliva using SWATH–DIA reveals systemic metabolic adaptations to exercise

Metabolomics
Hashmi MA, Gogia D, Singh N, Ramanathan A. ACS Omega 2026;11(21):30561.
 

Dose-dependent effects of dihydronicotinamide riboside on human engineered skeletal muscle development

Human tissue models
Muscle and aging
Venkateshvaran A, Pundlik SS, Suresh Y, Hegde A, Venkatesh B, et al. ACS Biomater Sci Eng 2026;12(7):3523–3538.
 

Integrative analysis of plasma small-molecule and gut-microbiome markers of sarcopenia in a pilot study within an Indian cohort

Sarcopenia
Metabolomics
Muscle and aging
Hashmi MA, Verma S, Math RGH, Muralidharan S, Pranesh G, et al. Scientific Reports 2026;16(1):5602.
Cover of the Landscape Analysis on Alternatives to Animal Testing for Drug Development in India

Landscape Analysis on Alternatives to Animal Testing for Drug Development in India

Human tissue models
Research practice
K V S Narayana Raju, Surat Parvatam, Harshita Mittal, Paulami Dey, Arvind Ramanathan, Apoorva, Vaishnavi Vasanth, Anita Varadharajan. Landscape Analysis Report 2025–26.…
 

Pharmacological profiling of intravenous MP-04: sustained NAD+ augmentation, immune modulation, and renal protection in preclinical models

Muscle and aging
Ghosh A, Pranesh G, Zachariah N, Murakami E, Heredia A, Mathur P, et al. Frontiers in Pharmacology 2026;17:1832979.
 

Bulking up India’s healthy ageing strategy

Sarcopenia
Muscle and aging
Commentary
Ramanathan A. Nature India. Comment. Published 23 July 2025.
 

Molecular mediators of cold adaptation in mammalian cells

Cold adaptation
Cold resilience
Dey P, Lal H, Saha P, Ramanathan A. Communications Biology 2025;8(1):1441.
 

Understanding the patterns and magnitude of life science publication retractions in the last four decades

Research practice
Bhattacharyya S, Chatterjee N, Ramanathan A. International Journal for Educational Integrity 2025;21(1):17.
 

Cold-shock proteome of myoblasts reveals role of RBM3 in promotion of mitochondrial metabolism and myoblast differentiation

Cold adaptation
Cold resilience
Muscle regeneration
Muscle and aging
Dey P, Rajalaxmi S, Saha P, Thakur PS, Hashmi MA, Lal H, Saini N, et al. Communications Biology 2024;7(1):515.
 

Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards

Metabolomics
Torta F, Hoffmann N, Burla B, Alecu I, Arita M, Bamba T, Bennett SAL, et al. Nature Communications 2024;15(1):8562.
 

Senescent cells inhibit mouse myoblast differentiation via the SASP-lipid 15d-PGJ2 mediated modification and control of HRas

Cellular senescence
Lipid signalling
Muscle regeneration
Muscle and aging
Pundlik SS, Barik A, Venkateshvaran A, Sahoo SS, Jaysingh MA, et al. eLife 2024;13:RP95229.
 

Aryl hydrocarbon receptor blocks aging-induced senescence in the liver and fibroblast cells

Cellular senescence
Muscle and aging
Nacarino-Palma A, Rico-Leo EM, Campisi J, Ramanathan A, et al. Aging (Albany NY) 2022;14(10):4281.
 

Oxylipin biosynthesis reinforces cellular senescence and allows detection of senolysis

Cellular senescence
Lipid signalling
Muscle and aging
Wiley CD, Sharma R, Davis SS, Lopez-Dominguez JA, Mitchell KP, et al. Cell Metabolism 2021;33(6):1124–1136.e5.
 

Proteome plasticity in response to persistent environmental change

Cold adaptation
Cold resilience
Domnauer M, Zheng F, Li L, Zhang Y, Chang CE, Unruh JR, et al. Molecular Cell 2021;81(16):3294–3309.e12.
 

The aging metabolome — biomarkers to hub metabolites

Metabolomics
Review
Sharma R, Ramanathan A. Proteomics 2020;20(5–6):1800407.
 

JNK modifies neuronal metabolism to promote proteostasis and longevity

Wang L, Davis SS, Borch Jensen M, Rodriguez-Fernandez IA, Apaydin C, et al. Aging Cell 2019;18(3):e12849.
 

Secretion of leukotrienes by senescent lung fibroblasts promotes pulmonary fibrosis

Cellular senescence
Muscle and aging
Wiley CD, Brumwell AN, Davis SS, Jackson JR, Valdovinos A, Calhoun C, et al. JCI Insight 2019;4(24):e130056.
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Earlier research

Work preceding 2019, spanning chemical biology, metabolism, mitochondrial function and systems biology.

α-Lipoic acid treatment prevents cystine urolithiasis in a mouse model of cystinuria

Zee T, Bose N, Zee J, Beck JN, Yang S, Parihar J, Yang M, Damodar S, et al. Nature Medicine 2017;23(3):288–290.

A Caenorhabditis elegans model elucidates a conserved role for TRPA1-Nrf signaling in reactive α-dicarbonyl detoxification

Chaudhuri J, Bose N, Gong J, Hall D, Rifkind A, Bhaumik D, Peiris TH, et al. Current Biology 2016;26(22):3014–3025.

A novel AhR ligand, 2AI, protects the retina from environmental stress

Gutierrez MA, Davis SS, Rosko A, Nguyen SM, Mitchell KP, Mateen S, et al. Scientific Reports 2016;6(1):29025.

Metformin inhibits branched-chain amino acid (BCAA) derived ketoacidosis and promotes metabolic homeostasis in MSUD

Sonnet DS, O’Leary MN, Gutierrez MA, Nguyen SM, Mateen S, Hsu Y, et al. Scientific Reports 2016;6(1):28775.

Mitochondrial dysfunction induces senescence with a distinct secretory phenotype

Wiley CD, Velarde MC, Lecot P, Liu SU, Sarnoski EA, Freund A, et al. Cell Metabolism 2016;23(2):303–314.

Peripheral circadian clocks mediate dietary restriction-dependent changes in lifespan and fat metabolism in Drosophila

Katewa SD, Akagi K, Bose N, Rakshit K, Camarella T, Zheng X, Hall D, et al. Cell Metabolism 2016;23(1):143–154.

Vitamin D promotes protein homeostasis and longevity via the stress response pathway genes skn-1, ire-1, and xbp-1

Mark KA, Dumas KJ, Bhaumik D, Schilling B, Davis S, Oron TR, et al. Cell Reports 2016;17(5):1227–1237.

A Drosophila model identifies a critical role for zinc in mineralization for kidney stone disease

Chi T, Kim MS, Lang S, Bose N, Kahn A, Flechner L, Blaschko SD, Zee T, et al. PLoS One 2015;10(5):e0124150.

A plasma signature of human mitochondrial disease revealed through metabolic profiling of spent media from cultured muscle cells

Shaham O, Slate NG, Goldberger O, Xu Q, Ramanathan A, Souza AL, et al. PNAS 2010;107(4):1571–1575.

Carbon metabolism–mediated myogenic differentiation

Bracha AL, Ramanathan A, Huang S, Ingber DE, Schreiber SL. Nature Chemical Biology 2010;6(3):202–204.

Direct control of mitochondrial function by mTOR

Ramanathan A, Schreiber SL. PNAS 2009;106(52):22229–22232.

Large-scale chemical dissection of mitochondrial function

Wagner BK, Kitami T, Gilbert TJ, Peck D, Ramanathan A, Schreiber SL, et al. Nature Biotechnology 2008;26(3):343–351. (corrigendum: Nat Biotechnol* 2008;26(7):831)*

Metabolite profiling of blood from individuals undergoing planned myocardial infarction reveals early markers of myocardial injury

Lewis GD, Wei RU, Liu E, Yang E, Shi X, Martinovic M, Farrell L, Asnani A, et al. Journal of Clinical Investigation 2008;118(10):3503–3512.

The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth

Christofk HR, Vander Heiden MG, Harris MH, Ramanathan A, et al. Nature 2008;452(7184):230–233.

Multilevel regulation of growth rate in yeast revealed using systems biology

Ramanathan A, Schreiber SL. Journal of Biology 2007;6(2):3.

High-density polymerase-mediated incorporation of fluorochrome-labeled nucleotides

Ramanathan A, Pape L, Schwartz DC. Analytical Biochemistry 2005;337(1):1–11.

Perturbational profiling of a cell-line model of tumorigenesis by using metabolic measurements

Ramanathan A, Wang C, Schreiber SL. PNAS 2005;102(17):5992–5997.

An integrative approach for the optical sequencing of single DNA molecules

Ramanathan A, Huff EJ, Lamers CC, Potamousis KD, Forrest DK, et al. Analytical Biochemistry 2004;330(2):227–241.

Shotgun optical maps of the whole Escherichia coli O157:H7 genome

Lim A, Dimalanta ET, Potamousis KD, Yen G, Apodoca J, Tao C, Lin J, et al. Genome Research 2001;11(9):1584–1593.
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